GeneMaster · PyPI
WEBSep 3, 2024 · The GeneMaster project is a comprehensive bioinformatics package designed to facilitate the analysis and manipulation of genetic sequences, including DNA and RNA. It provides a robust set of data types and operations tailored to genomic research, allowing users to perform tasks such as reverse complement generation, GC content calculation, RNA ...
pydna - PyPI
WEBFeb 2, 2023 · The pydna python package provide a human-readable formal descriptions of :dna: cloning and genetic assembly strategies in Python :snake: which allow for simulation and verification. Pydna can be used as executable documentation for cloning.
dnachisel - PyPI
WEBMar 2, 2011 · DNA Chisel (complete documentation here) is a Python library for optimizing DNA sequences with respect to a set of constraints and optimization objectives. It comes with over 15 classes of sequence specifications which can be composed to, for instance, codon-optimize genes, meet the constraints of a …
BjornFJohansson/pydna - GitHub
WEBThe pydna python package provide a human-readable formal descriptions of 🧬 cloning and genetic assembly strategies in Python 🐍 which allow for simulation and verification. Pydna can be used as executable documentation for cloning.
WEBNSDPY is a python package that combines flexibility and ease of use to 18 download large amount of DNA sequences and includes several taxonomic or filtering options like batch 19 downloading sequences for a list of taxa, downloading sequences including taxonomic lineage or 20 filtering CDS sequences for a specific gene.
neufeld/pandaseq: PAired-eND Assembler for DNA sequences - GitHub
WEBPANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. INSTALLATION. Binary packages are available for recent versions of Windows, MacOS and Linux. Source code is also available. See Installation instructions for details.
NSDPY: A python package to download DNA sequences from …
WEBJun 1, 2022 · NSDPY is a python package that combines flexibility and ease of use to download large amount of DNA sequences and includes several taxonomic or filtering options like batch downloading...
Logomaker: beautiful sequence logos in Python
WEBLogomaker is a Python package for generating publication-quality sequence logos. Logomaker can generate both standard and highly customized logos illustrating the properties of DNA, RNA, or protein sequences.
NSDPY: Batch downloading from NCBI database with python3
WEBnsdpy (NCBI sequence Downloader) aims to facilitate the download of large numbers of DNA sequences from the NCBI nucleotide database, sort them by taxonomic rank and if necessary, extract a specific gene from long sequences (e.g. mitochondrial genome) based on sequence annotations. Batch download for list of taxa is also possible.
NSDPY: A python package to download DNA sequences from NCBI
WEBJun 1, 2022 · NSDPY is a python package that combines flexibility and ease of use to download large amount of DNA sequences and includes several taxonomic or filtering options like batch downloading sequences for a list of taxa, downloading sequences including taxonomic lineage or filtering CDS sequences for a specific gene.